منابع مشابه
PISCES: a protein sequence culling server
PISCES is a public server for culling sets of protein sequences from the Protein Data Bank (PDB) by sequence identity and structural quality criteria. PISCES can provide lists culled from the entire PDB or from lists of PDB entries or chains provided by the user. The sequence identities are obtained from PSI-BLAST alignments with position-specific substitution matrices derived from the non-redu...
متن کاملPISCES: recent improvements to a PDB sequence culling server
PISCES is a database server for producing lists of sequences from the Protein Data Bank (PDB) using a number of entry- and chain-specific criteria and mutual sequence identity. Our goal in culling the PDB is to provide the longest list possible of the highest resolution structures that fulfill the sequence identity and structural quality cut-offs. The new PISCES server uses a combination of PSI...
متن کاملMONSTER: Minnesota prOteiN Sequence annotaTion servER
Summary: MONSTER is a server for predicting the local structure and function properties of protein sequences. MONSTER provides residue-wise annotation services, that include secondary structure, transmembrane-helix region, disorder region, protein-dna binding site, local structure alphabet, solvent accessibility surface area, and residue-wise contact order prediction. MONSTER uses sequence-deri...
متن کاملAlignMe—a membrane protein sequence alignment web server
We present a web server for pair-wise alignment of membrane protein sequences, using the program AlignMe. The server makes available two operational modes of AlignMe: (i) sequence to sequence alignment, taking two sequences in fasta format as input, combining information about each sequence from multiple sources and producing a pair-wise alignment (PW mode); and (ii) alignment of two multiple s...
متن کاملPROCAIN server for remote protein sequence similarity search
UNLABELLED Sensitive and accurate detection of distant protein homology is essential for the studies of protein structure, function and evolution. We recently developed PROCAIN, a method that is based on sequence profile comparison and involves the analysis of four signals--similarities of residue content at the profile positions combined with three types of assisting information: sequence moti...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2003
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btg224